Sequence Similarity Clusters for the Entities in PDB 3VI4

Entity #1 | Chains: A,C
Integrin alpha-5 protein, length: 632 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26600
95 % 2 2 20811 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 2 20286
70 % 2 2 18736
50 % 4 9 5933
40 % 4 9 5753
30 % 4 12 4083
Entity #2 | Chains: B,D
Integrin beta-1 protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25334
95 % 6 6 10705 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 6 6 10591
70 % 6 6 10183
50 % 6 6 9433
40 % 35 43 1037
30 % 35 43 1079
Entity #3 | Chains: E,L
SG/19 Fab fragment (Light chain) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26601
95 % 10 14 3992 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 31 35 1144
70 % 1706 2391 2
50 % 2118 3030 2
40 % 2118 3030 2
30 % 4304 6153 1
Entity #4 | Chains: F,H
SG/19 Fab fragment (Heavy chain) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26602
95 % 2 2 20812 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 10 14 3240
70 % 2047 2928 1
50 % 2157 3079 1
40 % 2157 3079 1
30 % 4305 6153 1
Entity #5 | Chains: G,I
RGD peptide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures