Sequence Similarity Clusters for the Entities in PDB 3VE0

Entity #1 | Chains: I
Envelope glycoprotein protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 87697
95 % 2 2 33569 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 2 2 32150
70 % 2 2 30693
50 % 2 3 14361
40 % 2 3 13362
30 % 2 3 12176
Entity #2 | Chains: J
Envelope glycoprotein protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 87696
95 % 2 2 33568 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 39564
70 % 2 2 35054
50 % 2 2 30435
40 % 2 2 23051
30 % 2 2 21774
Entity #3 | Chains: A
16F6 Antibody chain A protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 87695
95 % 2 2 43488 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 41408
70 % 2484 2969 1
50 % 2605 3121 1
40 % 2605 3121 1
30 % 5206 6236 1
Entity #4 | Chains: B
16F6 Antibody chain B protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 52496
95 % 3 3 26851 Flexibility: Medium
Max RMSD: 5.0, Avg RMSD: 3.4
PDBFlex
90 % 54 71 605
70 % 2053 2418 2
50 % 2567 3071 2
40 % 2567 3071 2
30 % 5207 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures