Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10397
95 % 4 5 10137 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 10007
70 % 5 6 6561
50 % 5 6 6114
40 % 5 6 5688
30 % 309 339 42
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34130
95 % 6 7 8700 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 6 7 8632
70 % 7 8 6790
50 % 11 12 4608
40 % 11 12 4357
30 % 11 12 3925
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18494
95 % 2 3 17004 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 16618
70 % 2 3 15024
50 % 2 3 13227
40 % 2 3 11852
30 % 2 3 10068
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YYH 1 A, B Notch 1, ankyrin domain ankyrin domain 9606
2 2HE0 1 A, B Notch1 preproprotein variant Ankyrin Domain, residues 1873-2115 9606
3 1OT8 1 A, B, C Neurogenic locus Notch protein Ankyrin Domain 7227
4 2F8X 4 K Neurogenic locus notch homolog protein 1 [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] 9606
5 3V79 1 K Neurogenic locus notch homolog protein 1 9606
6 3NBN 2 B, E Neurogenic locus notch homolog protein 1 residues 1872-2126 9606