Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17394
95 % 4 5 8922 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 8834
70 % 5 6 6429
50 % 5 6 5992
40 % 5 6 5576
30 % 298 327 42
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33463
95 % 6 7 8516 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 6 7 8448
70 % 7 8 6657
50 % 11 12 4501
40 % 11 12 4252
30 % 11 12 3837
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18100
95 % 2 3 16641 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 16269
70 % 2 3 14733
50 % 2 3 12985
40 % 2 3 11641
30 % 2 3 9877
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures