3V6D

Crystal structure of HIV-1 reverse transcriptase (RT) cross-linked with AZT-terminated DNA


Sequence Similarity Clusters for the Entities in PDB 3V6D

Entity #1 | Chains: A,C
HIV-1 REVERSE TRANSCRIPTASE P66 subunit protein, length: 556 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 2947
95 % 182 305 108
90 % 182 305 116
70 % 182 305 126
50 % 183 306 142
40 % 183 307 160
30 % 183 307 167
Entity #2 | Chains: B,D
HIV-1 REVERSE TRANSCRIPTASE P51 subunit protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 132 215
95 % 178 299 115
90 % 178 299 121
70 % 178 299 133
50 % 179 300 150
40 % 179 301 166
30 % 179 301 173
Entity #3 | Chains: E,T
DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,P
DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures