Sequence Similarity Clusters for the Entities in PDB 3V62

Entity #1 | Chains: A,D
Ubiquitin-like protein SMT3 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15747
95 % 3 5 12338 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 3 5 12172
70 % 3 5 11572
50 % 24 35 1221
40 % 3 5 9961
30 % 3 5 9209
Entity #2 | Chains: B,E
Proliferating cell nuclear antigen protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20458
95 % 6 24 2025 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.3
PDBFlex
90 % 6 24 2053
70 % 6 24 2137
50 % 6 24 2176
40 % 33 70 356
30 % 35 76 304
Entity #3 | Chains: C,F
ATP-dependent DNA helicase SRS2 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44220
95 % 1 1 39689 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 37864
70 % 1 1 33620
50 % 1 1 29232
40 % 1 1 26592
30 % 1 1 23588

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures