Sequence Similarity Clusters for the Entities in PDB 3V52

Entity #1 | Chains: H
ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21774
95 % 4 4 20960 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 4 20444
70 % 220 2943 1
50 % 238 3094 1
40 % 238 3094 1
30 % 466 6183 1
Entity #2 | Chains: L
ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 L CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 23443
95 % 19 164 166 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 22 174 155
70 % 176 2399 2
50 % 223 3045 2
40 % 223 3045 2
30 % 467 6183 1
Entity #3 | Chains: P
H-2 class I histocompatibility antigen, L-D alpha chain protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures