Sequence Similarity Clusters for the Entities in PDB 3V3Z

Entity #1 | Chains: H
Reaction center protein H chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 91 400
95 % 75 97 447 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 75 97 481
70 % 75 97 518
50 % 75 97 547
40 % 75 97 586
30 % 75 97 611
Entity #2 | Chains: L
Reaction center protein L chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66522
95 % 75 97 446 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 75 97 480
70 % 75 97 517
50 % 96 131 422
40 % 96 131 438
30 % 96 131 454
Entity #3 | Chains: M
Reaction center protein M chain protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48736
95 % 75 97 450 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 75 97 483
70 % 75 97 520
50 % 96 131 421
40 % 96 131 439
30 % 96 131 455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures