Sequence Similarity Clusters for the Entities in PDB 3V3Y

Entity #1 | Chains: H
Reaction center protein H chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 91 463
95 % 88 97 533 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 88 97 559
70 % 88 97 591
50 % 88 97 630
40 % 88 97 666
30 % 88 97 684
Entity #2 | Chains: L
Reaction center protein L chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44979
95 % 88 97 532 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 88 97 558
70 % 88 97 590
50 % 110 131 456
40 % 110 131 482
30 % 110 131 497
Entity #3 | Chains: M
Reaction center protein M chain protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44980
95 % 88 97 538 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 88 97 563
70 % 88 97 597
50 % 110 131 457
40 % 110 131 484
30 % 110 131 499

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures