Sequence Similarity Clusters for the Entities in PDB 3ULV

Entity #1 | Chains: A
Toll-like receptor 3 protein, length: 694 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16788
95 % 4 5 13796 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 4 5 13613
70 % 5 7 9506
50 % 5 7 8848
40 % 5 7 8485
30 % 5 7 7916
Entity #2 | Chains: L
Fab15 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 14156
95 % 182 213 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 460 538 4
70 % 2098 2391 2
50 % 2623 3030 2
40 % 2623 3030 2
30 % 5323 6153 1
Entity #3 | Chains: H
Fab15 heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 32309
95 % 6 7 12676 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 6 7 12471
70 % 2540 2928 1
50 % 2664 3079 1
40 % 2664 3079 1
30 % 5324 6153 1
Entity #4 | Chains: C
Fab12 light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49388
95 % 2 3 19918 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 6.7
PDBFlex
90 % 80 90 287
70 % 495 605 7
50 % 2624 3030 2
40 % 2624 3030 2
30 % 5325 6153 1
Entity #5 | Chains: D
Fab12 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25946
95 % 2 3 19919 Flexibility: Medium
Max RMSD: 10.3, Avg RMSD: 7.0
PDBFlex
90 % 2 3 19456
70 % 2541 2928 1
50 % 2665 3079 1
40 % 2665 3079 1
30 % 5326 6153 1
Entity #6 | Chains: E
Fab1068 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15882
95 % 2 3 13797 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 461 538 4
70 % 2099 2391 2
50 % 2625 3030 2
40 % 2625 3030 2
30 % 5327 6153 1
Entity #7 | Chains: F
Fab1068 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49389
95 % 2 3 13906 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 2 3 13718
70 % 2542 2928 1
50 % 2666 3079 1
40 % 2666 3079 1
30 % 5328 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NCJ 2 H Fab15 Mut8 heavy chain 9606
2 3NA9 2 H Fab15 heavy chain 9606
3 3NAA 2 H Fab15 Mut5 heavy chain 9606
4 3NAC 2 H Fab15 Mut7 heavy chain 9606
5 3NAB 2 H Fab15 Mut6 heavy chain 9606
6 3ULV 3 H Fab15 heavy chain 9606
7 3ULU 3 H Fab15 heavy chain 9606