Sequence Similarity Clusters for the Entities in PDB 3ULV

Entity #1 | Chains: A
Toll-like receptor 3 protein, length: 694 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16824
95 % 4 5 13952 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 4 5 13755
70 % 5 7 9524
50 % 5 7 8859
40 % 5 7 8487
30 % 5 7 7937
Entity #2 | Chains: L
Fab15 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 14905
95 % 180 212 79 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 670 784 2
70 % 2104 2399 2
50 % 2634 3045 2
40 % 2634 3045 2
30 % 5345 6183 1
Entity #3 | Chains: H
Fab15 heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 33791
95 % 6 7 12401 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 6 7 12244
70 % 2551 2943 1
50 % 2675 3094 1
40 % 2675 3094 1
30 % 5346 6183 1
Entity #4 | Chains: C
Fab12 light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49778
95 % 2 3 19495 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 6.7
PDBFlex
90 % 51 56 604
70 % 499 609 7
50 % 2635 3045 2
40 % 2635 3045 2
30 % 5347 6183 1
Entity #5 | Chains: D
Fab12 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25824
95 % 2 3 19686 Flexibility: Medium
Max RMSD: 10.3, Avg RMSD: 7.0
PDBFlex
90 % 2 3 19259
70 % 2552 2943 1
50 % 2676 3094 1
40 % 2676 3094 1
30 % 5348 6183 1
Entity #6 | Chains: E
Fab1068 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15884
95 % 2 3 13836 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 671 784 2
70 % 2105 2399 2
50 % 2636 3045 2
40 % 2636 3045 2
30 % 5349 6183 1
Entity #7 | Chains: F
Fab1068 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49409
95 % 2 3 13951 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 2 3 13754
70 % 2553 2943 1
50 % 2677 3094 1
40 % 2677 3094 1
30 % 5350 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1ZIW 1 A Toll-like receptor 3 extracellular domain 9606
2 2A0Z 1 A Toll-like receptor 3 9606
3 3CIG 1 A Toll-like receptor 3 mouse TLR3 ectodomain (UNP residues 28-704) 10090
4 5GS0 1 A, B Toll-like receptor 3 ectodomain (UNP RESIDUES 27-697) 9606
5 3ULV 1 A Toll-like receptor 3 UNP residues 22-702 9606
6 3ULU 1 A Toll-like receptor 3 UNP residues 22-702 9606
7 3CIY 3 A, B Toll-like receptor 3 mouse TLR3 ectodomain (UNP residues 28-704) 10090