Sequence Similarity Clusters for the Entities in PDB 3ULV

Entity #1 | Chains: A
Toll-like receptor 3 protein, length: 694 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15879
95 % 4 5 13722 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 4 5 13528
70 % 5 7 9425
50 % 5 7 8792
40 % 5 7 8420
30 % 5 7 7858
Entity #2 | Chains: L
Fab15 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 15067
95 % 192 223 74 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 460 538 4
70 % 2077 2367 2
50 % 2600 3002 2
40 % 2600 3002 2
30 % 5272 6093 1
Entity #3 | Chains: H
Fab15 heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30779
95 % 6 7 12592 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 6 7 12401
70 % 2518 2902 1
50 % 2625 3034 1
40 % 2636 3047 1
30 % 5273 6093 1
Entity #4 | Chains: C
Fab12 light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39813
95 % 2 3 19728 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 6.7
PDBFlex
90 % 37 41 866
70 % 493 601 7
50 % 2601 3002 2
40 % 2601 3002 2
30 % 5274 6093 1
Entity #5 | Chains: D
Fab12 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21470
95 % 2 3 19491 Flexibility: Medium
Max RMSD: 10.3, Avg RMSD: 7.0
PDBFlex
90 % 2 3 19088
70 % 2519 2902 1
50 % 2626 3034 1
40 % 2637 3047 1
30 % 5275 6093 1
Entity #6 | Chains: E
Fab1068 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14015
95 % 2 3 13724 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 461 538 4
70 % 2078 2367 2
50 % 2602 3002 2
40 % 2602 3002 2
30 % 5276 6093 1
Entity #7 | Chains: F
Fab1068 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40582
95 % 2 3 13723 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 2 3 13529
70 % 2520 2902 1
50 % 2627 3034 1
40 % 2638 3047 1
30 % 5277 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures