Sequence Similarity Clusters for the Entities in PDB 3UBQ

Entity #1 | Chains: A,C,E,G,I,K
hemagglutinin HA1 protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 2296
95 % 1 19 684 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 1 20 697
70 % 3 70 260
50 % 11 184 91
40 % 30 391 14
30 % 30 391 19
Entity #2 | Chains: B,D,F,H,J,L
hemagglutinin HA2 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 936
95 % 1 19 680 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 3 61 257
70 % 11 185 57
50 % 27 377 11
40 % 27 377 16
30 % 27 388 23

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures