Sequence Similarity Clusters for the Entities in PDB 3U4B

Entity #1 | Chains: H
CH04 Heavy chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12210
95 % 3 4 12590 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 4 12421
70 % 1997 2773 1
50 % 2100 2914 1
40 % 2100 2914 1
30 % 4201 5831 1
Entity #2 | Chains: L
CH02 Light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34399
95 % 2 3 14400 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 2 3 14192
70 % 1664 2262 2
50 % 2072 2875 2
40 % 2072 2875 2
30 % 4202 5831 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures