Sequence Similarity Clusters for the Entities in PDB 3U36

Entity #1 | Chains: A,C,E,H
PG9 Fab heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22159
95 % 4 5 7531 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 4 5 7525
70 % 2338 2902 1
50 % 2440 3034 1
40 % 2451 3047 1
30 % 4902 6093 1
Entity #2 | Chains: B,D,F,L
PG9 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8681
95 % 4 6 7190 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.2
PDBFlex
90 % 73 86 290
70 % 451 601 7
50 % 2418 3002 2
40 % 2418 3002 2
30 % 4903 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures