Sequence Similarity Clusters for the Entities in PDB 3U1I

Entity #1 | Chains: A,C
Serine protease subunit NS2B protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34425
95 % 2 2 27128 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 27593
70 % 2 2 23787
50 % 2 2 20815
40 % 2 8 8304
30 % 2 8 7529
Entity #2 | Chains: B,D
Serine protease NS3 protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29841
95 % 2 2 25324 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.7
PDBFlex
90 % 2 2 24501
70 % 2 2 22355
50 % 15 16 1805
40 % 15 16 1854
30 % 15 16 1879
Entity #3 | Chains: E,F
peptide of (BEZ)(NLE)KR(OAR) protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures