Sequence Similarity Clusters for the Entities in PDB 3TZV

Entity #1 | Chains: A,G
Invariant Natural Killer T Cell Receptor chain A protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 4001
95 % 8 11 4094 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 8 11 4161
70 % 235 257 103
50 % 352 393 76
40 % 352 393 92
30 % 352 393 91
Entity #2 | Chains: B,H
Invariant Natural Killer T Cell Receptor chain B protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24104
95 % 14 17 2635 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 14 17 2687
70 % 342 380 43
50 % 359 402 64
40 % 359 402 82
30 % 359 402 86
Entity #3 | Chains: C
Antigen-presenting glycoprotein CD1d protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24264
95 % 11 13 4105 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 13 15 3586
70 % 13 15 3498
50 % 127 136 366
40 % 127 136 380
30 % 129 138 388
Entity #4 | Chains: D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 662 698 2
95 % 710 747 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 726 763 3
70 % 1013 1064 4
50 % 1033 1088 4
40 % 1033 1088 4
30 % 1033 1088 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures