Sequence Similarity Clusters for the Entities in PDB 3TPU

Entity #1 | Chains: A,C,G,M
42F3 alpha protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6532
95 % 8 8 7112 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 9 9 5936
70 % 39 41 1208
50 % 350 396 77
40 % 350 396 91
30 % 350 396 91
Entity #2 | Chains: B,D,H,N
42F3 beta protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6291
95 % 8 8 6725 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 8 8 7174
70 % 338 379 43
50 % 357 405 64
40 % 357 405 81
30 % 357 405 86
Entity #3 | Chains: E,I,K,Q
H2-Ld SBM2 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3068
95 % 12 14 2492 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 12 14 2607
70 % 12 14 2641
50 % 13 15 2580
40 % 13 15 2590
30 % 13 15 2573
Entity #4 | Chains: F,J,L,R
p5E8 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4MS8 2 D 42F3 beta 10090
2 3TJH 4 D 42F3 beta 10090
3 4MXQ 2 D 42F3 beta VmVh chimera 10090
4 4N0C 4 D, H 42F3 VmCh beta 10090
5 4N5E 2 D 42F3 beta VmCh 10090
6 3TFK 4 D 42F3 beta Mouse-human chimera beta chain 10090
7 4MVB 2 D 42F3 beta VmCh 10090
8 3TPU 2 B, D, H, N 42F3 beta 10090