Sequence Similarity Clusters for the Entities in PDB 3TPU

Entity #1 | Chains: A,C,G,M
42F3 alpha protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6009
95 % 8 8 6757 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 9 9 5657
70 % 39 41 1208
50 % 348 395 78
40 % 348 395 94
30 % 348 395 92
Entity #2 | Chains: B,D,H,N
42F3 beta protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5866
95 % 8 8 6521 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 8 8 6876
70 % 336 377 43
50 % 355 403 67
40 % 355 403 85
30 % 355 403 88
Entity #3 | Chains: E,I,K,Q
H2-Ld SBM2 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3236
95 % 12 14 2514 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 12 14 2614
70 % 12 14 2665
50 % 13 15 2577
40 % 13 15 2597
30 % 13 15 2583
Entity #4 | Chains: F,J,L,R
p5E8 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4MS8 1 C 42F3 alpha 10090
2 3TJH 3 C 42F3 alpha 10090
3 4MXQ 1 C 42F3 alpha VmVh chimera 10090
4 4N0C 3 C, G 42F3 VmCh alpha 10090
5 4N5E 1 C 42F3 alpha VmCh 10090
6 3TFK 3 C 42F3 alpha Mouse-human chimera alpha chain 10090
7 4MVB 1 C 42F3 alpha VmCh 10090
8 3TPU 1 A, C, G, M 42F3 alpha 10090