Sequence Similarity Clusters for the Entities in PDB 3TPU

Entity #1 | Chains: A,C,G,M
42F3 alpha protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 5924
95 % 8 8 6715 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 9 9 5717
70 % 39 41 1195
50 % 348 394 76
40 % 348 394 89
30 % 348 394 90
Entity #2 | Chains: B,D,H,N
42F3 beta protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 6185
95 % 8 8 6432 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 8 8 6474
70 % 339 381 43
50 % 355 403 64
40 % 355 403 80
30 % 355 403 85
Entity #3 | Chains: E,I,K,Q
H2-Ld SBM2 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3209
95 % 12 14 2502 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 12 14 2574
70 % 12 14 2608
50 % 13 15 2545
40 % 13 15 2592
30 % 13 15 2560
Entity #4 | Chains: F,J,L,R
p5E8 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures