Sequence Similarity Clusters for the Entities in PDB 3TID

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31176
95 % 4 66 501 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 4 66 531
70 % 82 812 6
50 % 82 817 8
40 % 84 861 9
30 % 84 885 11
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 698 2
95 % 89 747 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 90 763 3
70 % 100 1064 4
50 % 102 1088 4
40 % 102 1088 4
30 % 102 1088 7
Entity #3 | Chains: C
LCMV derived octamer peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures