Sequence Similarity Clusters for the Entities in PDB 3THW

Entity #1 | Chains: A
DNA mismatch repair protein Msh2 protein, length: 934 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 11937
95 % 4 9 9811 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.2
PDBFlex
90 % 4 9 9716
70 % 4 9 9425
50 % 4 9 8883
40 % 4 9 8403
30 % 4 9 7834
Entity #2 | Chains: B
DNA mismatch repair protein Msh3 protein, length: 918 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 27567
95 % 3 4 21914 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 3 4 21340
70 % 3 4 19590
50 % 3 4 17440
40 % 3 4 16101
30 % 3 4 14533
Entity #3 | Chains: D
DNA Loop4 hairpin dna, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3THX 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
2 3THY 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
3 2O8B 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
4 3THW 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
5 2O8D 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
6 2O8F 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
7 2O8E 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
8 2O8C 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
9 3THZ 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details