Sequence Similarity Clusters for the Entities in PDB 3THW

Entity #1 | Chains: A
DNA mismatch repair protein Msh2 protein, length: 934 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 11502
95 % 4 9 9541 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.2
PDBFlex
90 % 4 9 9471
70 % 4 9 9189
50 % 4 9 8553
40 % 4 9 8192
30 % 4 9 7669
Entity #2 | Chains: B
DNA mismatch repair protein Msh3 protein, length: 918 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 27704
95 % 3 4 24605 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 3 4 21525
70 % 3 4 21790
50 % 3 4 17602
40 % 3 4 17651
30 % 3 4 15850
Entity #3 | Chains: D
DNA Loop4 hairpin dna, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3THX 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
2 3THY 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
3 2O8B 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
4 3THW 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
5 2O8D 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
6 2O8F 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
7 2O8C 3 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details
8 3THZ 1 A DNA mismatch repair protein Msh2 9606 5.3.1.24 | Details