Sequence Similarity Clusters for the Entities in PDB 3THW

Entity #1 | Chains: A
DNA mismatch repair protein Msh2 protein, length: 934 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 11982
95 % 4 9 9450 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.2
PDBFlex
90 % 4 9 9369
70 % 4 9 9087
50 % 4 9 8451
40 % 4 9 8130
30 % 4 9 7834
Entity #2 | Chains: B
DNA mismatch repair protein Msh3 protein, length: 918 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21910
95 % 3 4 21242 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 3 4 19831
70 % 3 4 18324
50 % 3 4 16950
40 % 3 4 15164
30 % 3 4 14156
Entity #3 | Chains: D
DNA Loop4 hairpin dna, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures