Sequence Similarity Clusters for the Entities in PDB 3SZK

Entity #1 | Chains: A,D
Hemoglobin subunit alpha protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 219 43
95 % 235 256 40 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 236 257 44
70 % 310 340 22
50 % 676 735 7
40 % 676 735 7
30 % 724 783 10
Entity #2 | Chains: B,E
Hemoglobin subunit beta protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 166 78
95 % 239 257 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 243 261 37
70 % 325 353 17
50 % 677 735 7
40 % 677 735 7
30 % 725 783 10
Entity #3 | Chains: C,F
Iron-regulated surface determinant protein H protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 17965
95 % 3 3 16755 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 3 16502
70 % 3 3 15428
50 % 4 4 11328
40 % 4 4 10647
30 % 4 4 9823

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures