Sequence Similarity Clusters for the Entities in PDB 3S8G

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70797
95 % 1 36 1794 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 36 1832
70 % 1 36 1826
50 % 1 36 1908
40 % 1 36 1956
30 % 1 36 1978
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 29 1746
95 % 1 36 1741 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 36 1780
70 % 1 36 1817
50 % 1 36 1859
40 % 1 36 1902
30 % 1 36 1935
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 36 1310
95 % 1 36 1747 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 1 36 1787
70 % 1 36 1822
50 % 1 36 1864
40 % 1 36 1907
30 % 1 36 1939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures