Sequence Similarity Clusters for the Entities in PDB 3S8F

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 4830
95 % 2 36 1927 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 36 1972
70 % 2 36 1967
50 % 2 36 2061
40 % 2 36 2035
30 % 2 36 2136
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1928
95 % 2 36 1871 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 36 1915
70 % 2 36 2024
50 % 2 36 2003
40 % 2 36 2054
30 % 2 36 2082
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide 2A protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 36 1488
95 % 2 36 1930 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 2 36 1975
70 % 2 36 2015
50 % 2 36 2064
40 % 2 36 2112
30 % 2 36 2138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures