Sequence Similarity Clusters for the Entities in PDB 3RYH

Entity #1 | Chains: A,C
Tubulin alpha chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 164 42
95 % 86 256 12 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 86 257 15
70 % 86 272 13
50 % 86 272 17
40 % 172 544 4
30 % 174 552 7
Entity #2 | Chains: B,D
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 5678
95 % 86 252 13 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 87 264 8
70 % 87 272 12
50 % 87 272 16
40 % 173 544 4
30 % 175 552 7
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 6893
95 % 74 118 435 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 74 118 459
70 % 74 118 493
50 % 74 118 528
40 % 74 118 563
30 % 74 118 593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6S8K 2 B Tubulin beta-2B chain 9913
2 5IYZ 2 B, D Tubulin beta-2B chain 9913
3 4I4T 2 B, D Tubulin beta-2B chain 9913
4 5NQU 2 B Tubulin beta-2B chain 9913
5 5LXT 2 B, D Tubulin beta-2B chain 9913
6 5EYP 2 B Tubulin beta chain 9940
7 6QTN 2 B, D Tubulin beta-2B chain 9913
8 6S8L 2 B Tubulin beta-3 chain 9606
9 4IHJ 2 B, D Tubulin beta-2B chain 9913
10 4TV9 2 B, D Tubulin beta-2B chain 9913
11 5M7E 2 B, D Tubulin beta-2B chain 9913
12 3RYC 2 B, D Tubulin beta chain 9940
13 5EZY 2 B, D Tubulin beta-2B chain 9913
14 4LNU 2 B Tubulin beta chain 9940
15 5EIB 2 D Tubulin beta-2B chain 9913
16 6FKL 2 B, D Tubulin beta-2B chain 9913
17 6FJM 2 B, D Tubulin beta-2B chain 9913
18 5M8G 2 B, D Tubulin beta-2B chain 9913
19 5NM5 2 B Tubulin beta-2B chain 9913
20 5NFZ 2 B, D Tubulin beta-2B chain 9913
21 4TUY 2 B, D Tubulin beta-2B chain 9913
22 4DRX 2 B, D Tubulin beta chain UNP residues 1-431 9940
23 6FKJ 2 B, D Tubulin beta-2B chain 9913
24 5LA6 2 B, D Tubulin beta-2B chain 9913
25 6F7C 2 B, D Tubulin beta-2B chain 9913
26 4I55 2 B, D Tubulin beta-2B chain 9913
27 4TV8 2 B, D Tubulin beta-2B chain 9913
28 5NQT 2 B Tubulin beta-2B chain 9913
29 4O4H 2 B, D Tubulin beta-2B chain 9913
30 5NG1 2 B, D Tubulin beta-2B chain 9913
31 5OSK 2 B, D Tubulin beta-2B chain 9913
32 5ITZ 2 B Tubulin beta-2B chain 9913
33 5M8D 2 B, D Tubulin beta-2B chain 9913
34 5M7G 2 B, D Tubulin beta-2B chain 9913
35 5YL2 2 B, D Tubulin beta chain 9823
36 4O4L 2 B, D Tubulin beta-2B chain 9913
37 5LXS 2 B, D Tubulin beta-2B chain 9913
38 5JQG 2 B, D Tubulin beta chain 9823
39 5JH7 2 B, D Tubulin beta-2B chain 9913
40 5J2T 2 B, D Tubulin beta-2B chain 9913
41 5XKG 2 B, D Tubulin beta chain 9823
42 5JCB 2 B, D Tubulin beta chain 9823
43 4O2B 2 B, D Tubulin beta-2B chain 9913
44 4O4J 2 B, D Tubulin beta-2B chain 9913
45 5MF4 2 B, D Tubulin beta-2B chain 9913
46 3RYI 2 B, D Tubulin beta chain 9940
47 5CB4 2 B, D Tubulin beta 41807
48 5JVD 2 B, D Tubulin beta-2B chain 9913
49 5XKH 2 B, D Tubulin beta chain 9823
50 6FII 2 B, D Tubulin beta-2B chain 9913
51 6O5M 2 B, D Tubulin beta-2B chain 9823
52 5XP3 2 B, D Tubulin beta chain 9823
53 4I50 2 B, D Tubulin beta-2B chain 9913
54 6BR1 2 B, D Tubulin beta-2B chain 9823
55 6QQN 2 B, D Tubulin beta-2B chain 9913
56 3RYF 2 B, D Tubulin beta chain 9940
57 4O4I 2 B, D Tubulin beta-2B chain 9913
58 5LOV 2 B, D Tubulin beta-2B chain 9913
59 5LYJ 2 B, D Tubulin beta-2B chain 9913
60 5OV7 2 B, D Tubulin beta-2B chain 9913
61 6NNG 2 B, D Tubulin beta-2B chain 9823
62 5CA1 2 B, D Tubulin beta-2 chain 9031
63 4ZOL 2 B, D Tubulin beta chain 9823
64 5XLZ 2 B, D Tubulin beta-2B chain 9913
65 6HX8 2 B, D Tubulin beta-2B chain 9913
66 6GJ4 2 B, D Tubulin beta-2B chain 9913
67 6GF3 2 B Tubulin beta-2B chain 9913
68 6GF3 3 D Tubulin beta-2B chain 9913
69 4ZI7 2 B, D Tubulin beta chain 9823
70 6FJF 2 B, D Tubulin beta-2B chain 9913
71 5BMV 2 B, D Tubulin beta chain 9823
72 6BRF 2 B, D Tubulin beta-2B chain 9823
73 6EG5 2 B, D Tubulin beta-2B chain 9913
74 6GWC 2 B Tubulin beta chain 9940
75 4O2A 2 B, D Tubulin beta-2B chain 9913
76 4F6R 2 B Tubulin beta chain 9940
77 5KX5 2 B, D Tubulin beta chain 9940
78 4ZHQ 2 B, D Tubulin beta chain 9823
79 5CA0 2 B, D Uncharacterized protein 9823
80 5NJH 2 B, D Tubulin beta-2B chain 9913
81 5O7A 2 B, D Tubulin beta-2B chain 9913
82 5FNV 2 B, D TUBULIN BETA CHAIN 10116
83 5GON 2 B, D Tubulin beta-2B chain UNP RESIDUES 1-431 9913
84 6BS2 2 B, D Tubulin beta-2B chain 9823
85 4YJ2 2 B, D Tubulin beta-2B chain 9913
86 6H9B 2 B, D Tubulin beta chain 9940
87 3RYH 2 B, D Tubulin beta chain 9940
88 4IIJ 2 B, D Tubulin beta-2B chain 9913
89 5XAF 2 B, D Tubulin beta-2B chain 9913
90 5J2U 2 B, D Tubulin beta-2B chain 9913
91 6KNZ 2 B, D Tubulin beta-2B chain 9913
92 5YZ3 2 B, D Tubulin beta-2B chain 9913
93 5H74 2 B, D Tubulin beta-2B chain 9913
94 6N47 2 B, D Tubulin beta-2B chain 9913
95 3UT5 2 B, D Tubulin beta chain 9940
96 6O61 2 B, D Tubulin beta-2B chain 9823
97 5XAG 2 B, D Tubulin beta-2B chain 9913
98 6GVN 2 B Tubulin beta chain 9940
99 5Z4P 2 B, D Tubulin beta-2B chain UNP residues 1-425 9913
100 6BRY 2 B, D Tubulin beta-2B chain 9823
101 6K9V 2 B, D Tubulin beta-2B chain 9913
102 6I5C 2 B, D Tubulin beta-2B chain 9913
103 5XKE 2 B, D Tubulin beta chain 9823
104 5C8Y 2 B, D Tubulin beta 41807
105 5YL4 2 B, D Tubulin beta chain 41807
106 6JCJ 2 B, D Tubulin beta-2B chain 9913
107 6D88 2 B, D Tubulin beta chain 9823
108 5YLJ 2 B, D Tubulin beta chain 9823
109 5XLT 2 B, D Tubulin beta-2B chain 9913
110 5ZXH 2 B, D Tubulin beta-2B chain 9913
111 5XKF 2 B, D Tubulin beta chain 9823
112 6AGK 2 B, D Tubulin beta-2B chain 9913
113 5H7O 2 B, D Tubulin beta-2B chain 9913
114 5XIW 2 B, D Tubulin beta chain 9823
115 6GX7 2 B, D Tubulin beta chain 9940
116 4FFB 2 B Tubulin beta chain 4932 3.6.5.6 | Details
117 4U3J 2 B Tubulin beta chain 4932
118 4HNA 2 B Tubulin beta chain 9940
119 5XHC 2 B, D Tubulin beta chain 41807
120 6MZG 2 B, D, H, J Tubulin beta chain 9823
121 6O5N 2 B, D Tubulin beta-2B chain 9823
122 4X1I 2 B, D Tubulin beta chain 9940
123 5XI5 2 B, D Tubulin beta chain 41807
124 5Z4U 2 B, D Tubulin beta-2B chain 9913
125 5YLS 2 B, D Tubulin beta chain 9823
126 4X1Y 2 B, D Tubulin beta chain 9940
127 5XI7 2 B, D Tubulin beta chain 41807
128 4X20 2 B, D Tubulin beta chain 9940
129 5MIO 2 B Tubulin beta chain 9940
130 4X1K 2 B, D Tubulin beta chain 9940
131 6GWD 2 B, D, F Tubulin beta chain 9940
132 4EB6 2 B, D Tubulin beta chain 9940
133 6MZE 2 B, D, I, K, P, R, W, Y Tubulin beta chain 9823
134 5LP6 2 B, D Tubulin beta-2B chain 9913
135 3HKE 2 B, D Tubulin beta chain 9940
136 3HKB 2 B, D Tubulin beta chain 9940
137 3HKD 2 B, D Tubulin beta chain 9940
138 3HKC 2 B, D Tubulin beta chain 9940
139 1SA0 2 B, D Tubulin beta chain 9913
140 6BBN 2 B, D Tubulin beta-2B chain 9913
141 3N2G 2 B, D Tubulin beta chain 9940
142 6GVM 2 B Tubulin beta chain 9940
143 3E22 2 B, D Tubulin beta-2B chain 9913
144 1SA1 2 B, D Tubulin beta chain 9913
145 1Z2B 2 B, D Tubulin beta chain 9913
146 3DU7 2 B, D Tubulin beta-2B chain 9913
147 3N2K 2 B, D Tubulin beta chain 9940
148 4YJ3 2 B, D Tubulin beta-2B chain 9913
149 4F61 2 B, D, F, H Tubulin beta chain 9940
150 6MZF 2 B, D, I, K, P, R, W, Y Tubulin beta chain 9823
151 1FFX 2 B, D PROTEIN (TUBULIN) 9913
152 6U42 1 0A, 0C, 0E, 0G, 0I, 0K, 0M, 0O, 0Q, 0S, 0U, 0W, 0Y, 1, 1A, 1C, 1E, 1G, 1K, 1M, 1O, 1Q, 1S, 1U, 1W, 2A, 2C, 2E, 2G, 2I, 2K, 2M, 2Q, 2S, 2U, 2W, 2Y, 3, 3A, 3C, 3G, 3I, 3K, 3M, 3O, 3Q, 3S, 5, 7, 9, A1, A3, A5, A7, A9, B1, B3, B5, B8, C0, C2, C4, C6, C8, D0, D2, D4, D6, D8, E0, E2, E4, E6, E8, F0, F2, F6, F8, G0, G2, G4, G6, G8, H2, H4, H6, H8, I0, I2, I4, I8, J0, J2, J4, J6, J8, K0, K4, K6, K8, L0, L2, L4, L6, M0, M2, M4, M6, M8, N0, N2, N6, N8, O0, O2, O4, O6, O8, P4, P6, P8, Q0, Q2, Q4, Q6, Q8, R0, R2, R4, R6, R8, S0, S2, S4, S6, S8, T0, T2, T4, T6, T8, U2, U4, U6, U8, V0, V2, V4, V6, V8, W0, W2, W4, W6, W8, X0, X2, X4, X6, X8, Y0, Y2, Y4, Y6, Y8, Z0, Z2, Z4, Z6, Z8 Tubulin beta 3055
153 6U0H 2 B Tubulin beta chain 5911 1.1.1.381 | Details
154 6U0T 2 B, I, J, K, L, M Tubulin beta chain 5911 1.1.1.381 | Details
155 6U0U 2 B, I, J, K, L, M Tubulin beta chain 5911 1.1.1.381 | Details
156 6S8M 2 B Tubulin beta chain 4896
157 6RZA 3 B, D Tubulin beta chain 9823
158 6RZB 2 B Tubulin beta chain 9823
159 6QVJ 3 S, U Tubulin beta chain GDP Taxol 9606
160 6QVE 3 G, H Beta1-tubulin GDP Taxol 9606
161 6QUS 3 S, U Tubulin beta chain GDP Taxol 9606
162 6QUY 3 G, H Tubulin beta chain GDP Taxol 9606
163 6O2Q 2 B, D, F, G, H, I Tubulin beta chain 9823
164 6O2R 2 B, D, F, G, H, I Tubulin beta chain 9823
165 6O2S 2 1H, 1O, 1P, 1Q, 1R, 1S, 1T, 1U, 1V, 1W, 1X, 1Y, 1Z, 2H, 2O, 2P, 2Q, 2R, 2S, 2T, 2U, 2V, 2W, 2X, 2Y, 2Z, 3H, 3O, 3P, 3Q, 3R, 3S, 3T, 3U, 3V, 3W, 3X, 3Y, 3Z, 4H, 4O, 4P, 4Q, 4R, 4S, 4T, 4U, 4V, 4W, 4X, 4Y, 4Z Tubulin beta chain 9823
166 6O2T 2 1H, 1O, 1P, 1Q, 1R, 1S, 1T, 1U, 1V, 1W, 1X, 1Y, 1Z, 2H, 2O, 2P, 2Q, 2R, 2S, 2T, 2U, 2V, 2W, 2X, 2Y, 2Z, 3H, 3O, 3P, 3Q, 3R, 3S, 3T, 3U, 3V, 3W, 3X, 3Y, 3Z, 4H, 4O, 4P, 4Q, 4R, 4S, 4T, 4U, 4V, 4W, 4X, 4Y, 4Z Tubulin beta chain 9823
167 6I2I 2 B Tubulin beta chain Beta1-tubulin 9606
168 6MLQ 2 B Tubulin beta chain 9823
169 6MLR 2 B Tubulin beta chain 9823
170 6E88 2 B, D, J, K, N, O Tubulin beta-2 chain 6239
171 6E7B 1 B Tubulin beta-3 chain 9606
172 6E7C 1 B Tubulin beta-2B chain 9606
173 6DPU 2 B, D, F, G, H, I Tubulin beta chain 9823
174 6DPV 2 B, D, F, G, H, I Tubulin beta chain 9823
175 6DPW 2 B, D, F, G, H, I Tubulin beta chain 9823
176 6CVJ 2 B, C Tubulin beta chain 9823
177 6CVN 1 A, C Tubulin beta chain 9823
178 6BJC 2 B, D, F, G, H, I Tubulin beta chain 9823
179 6EVX 1 B, D, F, G, H, I Tubulin beta chain 9823
180 6EVY 2 B, D, F, G, H, I Tubulin beta chain 9823
181 6EVZ 1 B, D, F, G, H, I Tubulin beta chain 9823
182 6EW0 2 B, D, F, G, H, I Tubulin beta chain 9823
183 6EVW 2 B, D, F, G, H, I Tubulin beta chain 9823
184 6B0C 2 B, D Tubulin beta chain 9823
185 6B0I 3 B Tubulin beta chain 9823
186 6B0L 2 B Tubulin beta chain 9823
187 5OGC 3 B Tubulin beta chain 9823
188 5XXT 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
189 5XXV 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
190 5XXW 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
191 5XXX 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
192 5OCU 3 B Tubulin beta chain 9823
193 5OAM 3 B Tubulin beta chain 9823
194 5W3F 2 B Tubulin beta chain 4932
195 5W3H 2 B Tubulin beta chain 4932
196 5W3J 2 B Tubulin beta chain 4932
197 5ND2 3 B Tubulin beta-2B chain 9913
198 5ND3 3 B Tubulin beta-2B chain 9913
199 5ND4 3 B Tubulin beta-2B chain 9913
200 5ND7 3 B Tubulin beta-2B chain 9913
201 5N5N 1 A, B, C, D, E, F Tubulin beta chain GMPCPP (GTP-analogue) bound 9606
202 5UCY 2 B Tubulin beta chain 5911 1.1.1.381 | Details
203 5UBQ 2 B, D, F Tubulin beta chain 5911 1.1.1.381 | Details
204 5MM4 3 B Tubulin beta chain 9823
205 5MM7 3 B Tubulin beta chain 9823
206 5MLV 3 C, F, I, L, N, R Tubulin beta chain 4896
207 5MJS 1 A, B, C, J Tubulin beta chain 4896
208 5M5N 2 B Tubulin beta-2B chain 9913
209 5M5O 2 B Tubulin beta-2B chain 9913
210 5M5C 3 B, E Tubulin beta-2B chain 9913
211 5M5I 2 B Tubulin beta-2B chain 9913
212 5M5L 2 B Tubulin beta-2B chain 9913
213 5M5M 2 B Tubulin beta-2B chain 9913
214 5M50 2 B, E Tubulin beta-2B chain 9913
215 5M54 3 B, E Tubulin beta-2B chain 9913
216 5SYF 2 B Tubulin beta chain 9823
217 5SYG 2 B Tubulin beta chain 9823
218 5SYC 2 B Tubulin beta chain 9823
219 5SYE 2 B Tubulin beta chain 9823
220 5KMG 2 B Tubulin beta chain 9823
221 5JCO 1 C, D, I, J, K, L Tubulin beta-3 chain 9606
222 5IJ0 2 B Tubulin beta-3 chain 9606
223 5IJ9 2 B Tubulin beta-3 chain 9606
224 5HNW 2 B Tubulin beta-2B chain 9913
225 5HNX 2 B Tubulin beta-2B chain 9913
226 5HNY 2 B Tubulin beta-2B chain UNP residues 2-427 9913
227 5HNZ 2 B Tubulin beta-2B chain 9913
228 3JAW 2 B, D Tubulin beta chain 9823
229 3JAT 2 B, D, F, G, H, I Tubulin beta chain 9823
230 3JAR 2 B, D, F, G, H, I Tubulin beta chain 9823
231 3JAS 2 B, D, F, G, H, I Tubulin beta chain 9823
232 3JAO 2 B Tubulin beta chain SEE REMARK 999 5911
233 3JAK 2 B, D, F, G, H, I Tubulin beta chain 9823
234 3JAL 2 B, D, F, G, H, I Tubulin beta chain 9823
235 3J8X 3 B Tubulin beta-2B chain 9823
236 3J8Y 3 B Tubulin beta-2B chain 9823
237 4UXO 2 B TUBULIN BETA-2B CHAIN 9913
238 4UXP 2 B TUBULIN BETA-2B CHAIN 9913
239 4UXR 2 B TUBULIN BETA-2B CHAIN 9913
240 4UXS 2 B TUBULIN BETA-2B CHAIN 9913
241 4UXT 2 B TUBULIN BETA-2B CHAIN 9913
242 4UXY 2 B BETA TUBULIN 9913
243 4UY0 2 B TUBULIN BETA-2B CHAIN RESIDUES 2-427 9913
244 3J7I 2 B Tubulin beta chain 9823
245 3J6P 3 B Tubulin beta chain 9823
246 3J6H 2 B Tubulin beta chain UNP residues 2-427 9823
247 3J6F 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
248 3J6G 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
249 3J6E 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
250 4CK5 2 B TUBULIN BETA-2B CHAIN 9913
251 4CK6 2 B TUBULIN BETA-2B CHAIN 9913
252 4CK7 2 B TUBULIN BETA-2B CHAIN 9913
253 3J2U 3 B, D Tubulin beta-2B chain 9913
254 3J1T 3 C Tubulin beta-2B chain 9913
255 3J1U 3 C Tubulin beta-2B chain 9913
256 4ATX 1 A TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
257 4ATU 1 A, C, E, G TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
258 4AQV 2 B TUBULIN BETA-2B CHAIN 9913
259 4AQW 2 B TUBULIN BETA-2B CHAIN 9913
260 4ABO 1 A, C, E, G TUBULIN BETA CHAIN 9823 3.6.5.6 | Details
261 2XRP 1 A, C, E, G TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
262 3IZ0 2 B beta tubulin, Chain B from PDB 1JFF 9913
263 2WBE 2 B TUBULIN BETA-2B CHAIN 9913
264 3EDL 2 B, G Beta tubulin 9913
265 3DCO 3 B Bovine Beta Tubulin Beta Tubulin Subunit 9913
266 2P4N 3 B Tubulin beta chain 9913
267 2HXF 2 B Tubulin beta chain 9823
268 2HXH 2 B Tubulin beta chain 9823
269 1TVK 2 B Tubulin beta chain see REMARK 400 9913
270 1JFF 2 B tubulin beta chain 9913
271 1IA0 2 B TUBULIN BETA CHAIN 9823
272 1TUB 2 B TUBULIN 9823