Sequence Similarity Clusters for the Entities in PDB 3RVW

Entity #1 | Chains: A
Peptidase 1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40704
95 % 3 10 5063 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 10 5102
70 % 5 14 3087
50 % 5 14 3068
40 % 5 14 3075
30 % 106 255 138
Entity #2 | Chains: C
4C1 - light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 9682
95 % 4 8 10303 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 6 30 2184
70 % 280 2391 2
50 % 354 3030 2
40 % 354 3030 2
30 % 731 6153 1
Entity #3 | Chains: D
4C1 - heavy chain protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 10004
95 % 4 8 10795 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 4 8 10737
70 % 348 2928 1
50 % 371 3079 1
40 % 371 3079 1
30 % 732 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures