Sequence Similarity Clusters for the Entities in PDB 3RVV

Entity #1 | Chains: A
Peptidase 1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24931
95 % 1 4 10755 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 1 4 10629
70 % 2 14 3160
50 % 2 14 3142
40 % 2 14 3138
30 % 91 255 138
Entity #2 | Chains: C
4C1 - light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 11312
95 % 1 8 10669 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 2 30 2190
70 % 221 2383 2
50 % 280 3022 2
40 % 280 3022 2
30 % 582 6138 1
Entity #3 | Chains: D
4C1 - heavy chain protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 9419
95 % 1 8 9940 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 1 8 9854
70 % 276 2922 1
50 % 296 3059 1
40 % 296 3072 1
30 % 583 6138 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures