Sequence Similarity Clusters for the Entities in PDB 3ROO

Entity #1 | Chains: A,C
Murine class I major histocompatibility complex H-2Kb protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 49 553
95 % 24 66 532 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 24 66 555
70 % 401 832 6
50 % 404 846 7
40 % 427 892 8
30 % 428 917 13
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 144 114
95 % 74 273 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 74 273 75
70 % 493 1098 4
50 % 502 1122 3
40 % 502 1122 3
30 % 502 1122 9
Entity #3 | Chains: E,F
Pre-glycoprotein polyprotein GP complex protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures