Sequence Similarity Clusters for the Entities in PDB 3RLF

Entity #1 | Chains: E
Maltose-binding periplasmic protein protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 66 442
95 % 78 127 229 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.3
PDBFlex
90 % 90 159 150
70 % 145 240 91
50 % 145 240 112
40 % 145 240 134
30 % 158 254 135
Entity #2 | Chains: F
Maltose transport system permease protein malF protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 5377
95 % 1 12 5823 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.2
PDBFlex
90 % 1 12 5859
70 % 1 12 5784
50 % 1 12 5562
40 % 1 12 5418
30 % 1 12 5165
Entity #3 | Chains: G
Maltose transport system permease protein malG protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 5398
95 % 1 12 6198 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 1 12 6215
70 % 1 12 6125
50 % 1 12 5857
40 % 1 12 5701
30 % 1 12 5437
Entity #4 | Chains: A,B
Maltose/maltodextrin import ATP-binding protein MalK protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 1263
95 % 1 17 1472 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.7
PDBFlex
90 % 1 17 1479
70 % 1 17 1529
50 % 1 22 1103
40 % 10 33 830
30 % 10 33 870

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures