Sequence Similarity Clusters for the Entities in PDB 3RKD

Entity #1 | Chains: A,B
Capsid protein protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12983
95 % 1 3 12389 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 1 3 12228
70 % 2 5 7644
50 % 2 5 7313
40 % 2 5 6861
30 % 2 5 6639
Entity #2 | Chains: C,L
Monoclonal Antibody, Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49321
95 % 2 2 28578 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 2 8 5999
70 % 361 2399 2
50 % 452 3045 2
40 % 452 3045 2
30 % 930 6183 1
Entity #3 | Chains: D,H
Monoclonal Antibody, Heavy Chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49320
95 % 1 1 32326 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 3 8 5631
70 % 443 2943 1
50 % 472 3094 1
40 % 472 3094 1
30 % 931 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures