Sequence Similarity Clusters for the Entities in PDB 3REA

Entity #1 | Chains: A,C
Protein Nef protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16426
95 % 2 5 5877 Flexibility: Low
Max RMSD: 7.0, Avg RMSD: 2.8
PDBFlex
90 % 2 5 6230
70 % 2 10 3043
50 % 2 10 3044
40 % 2 10 3039
30 % 2 10 3078
Entity #2 | Chains: B,D
Tyrosine-protein kinase HCK protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40184
95 % 1 1 34566 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 5 6420
70 % 1 5 11754
50 % 4 16 3467
40 % 4 19 3101
30 % 81 252 175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures