Sequence Similarity Clusters for the Entities in PDB 3QFJ

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 129 217 73
95 % 169 270 69 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 195 325 43
70 % 497 790 6
50 % 498 795 8
40 % 533 839 9
30 % 537 862 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 441 685 2
95 % 474 733 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 480 748 3
70 % 622 1037 4
50 % 636 1061 4
40 % 636 1061 4
30 % 636 1061 8
Entity #3 | Chains: C
TAX(Y5F) peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
A6 alpha chain protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 7384
95 % 4 14 4614 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 8 33 1536
70 % 94 249 106
50 % 131 381 75
40 % 131 381 91
30 % 131 381 90
Entity #5 | Chains: E
A6 beta chain protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30236
95 % 12 25 2358 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 40 77 405
70 % 133 372 43
50 % 135 394 68
40 % 135 394 80
30 % 135 394 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures