3QFJ

The complex between TCR A6 and human Class I MHC HLA-A2 with the modified TAX (Y5F) peptide


Sequence Similarity Clusters for the Entities in PDB 3QFJ

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 245 53
95 % 190 311 63
90 % 223 375 30
70 % 577 907 6
50 % 583 921 7
40 % 635 987 8
30 % 641 1015 14
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 533 814 2
95 % 565 862 2
90 % 578 884 3
70 % 730 1198 4
50 % 746 1226 3
40 % 746 1226 4
30 % 746 1226 9
Entity #3 | Chains: C
TAX(Y5F) peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
A6 alpha chain protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 9145
95 % 4 14 5860
90 % 8 38 1381
70 % 123 335 80
50 % 159 448 62
40 % 159 448 85
30 % 159 448 91
Entity #5 | Chains: E
A6 beta chain protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 38168
95 % 14 31 2064
90 % 55 96 379
70 % 160 439 27
50 % 162 456 60
40 % 162 456 80
30 % 162 456 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures