Sequence Similarity Clusters for the Entities in PDB 3QDJ

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 222 54
95 % 197 277 64 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 238 339 38
70 % 580 823 6
50 % 587 837 8
40 % 624 882 9
30 % 629 906 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 515 716 2
95 % 548 765 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 560 783 3
70 % 737 1086 4
50 % 751 1110 4
40 % 751 1110 5
30 % 751 1110 8
Entity #3 | Chains: C
MART-1(27-35) peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DMF5 alpha chain protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 17861
95 % 6 11 6124 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.6
PDBFlex
90 % 11 33 1637
70 % 95 185 168
50 % 170 397 74
40 % 170 397 95
30 % 170 397 93
Entity #5 | Chains: E
DMF5 beta chain protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 17862
95 % 10 13 4304 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 10 13 4602
70 % 171 392 40
50 % 174 405 64
40 % 174 405 86
30 % 174 405 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures