Sequence Similarity Clusters for the Entities in PDB 3Q4F

Entity #1 | Chains: A,B,E,F
Non-homologous end-joining factor 1 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 1900
95 % 4 6 2380 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.6
PDBFlex
90 % 4 6 2441
70 % 4 6 2501
50 % 4 6 2528
40 % 4 6 2552
30 % 4 6 2528
Entity #2 | Chains: C,D,G,H
DNA repair protein XRCC4 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22667
95 % 1 1 23081 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 13473
70 % 1 1 20558
50 % 1 1 18175
40 % 1 1 16837
30 % 1 1 14975

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures