Sequence Similarity Clusters for the Entities in PDB 3PUY

Entity #1 | Chains: E
Maltose transporter subunit; periplasmic-binding component of ABC superfamily protein, length: 378 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 65 429
95 % 103 123 236 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.3
PDBFlex
90 % 124 154 151
70 % 201 235 90
50 % 201 235 114
40 % 201 235 138
30 % 212 246 139
Entity #2 | Chains: F
Maltose transporter subunit; membrane component of ABC superfamily protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 4873
95 % 7 12 5653 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.2
PDBFlex
90 % 7 12 5699
70 % 7 12 5990
50 % 7 12 5746
40 % 7 12 5285
30 % 7 12 5338
Entity #3 | Chains: G
Maltose transporter subunit; membrane component of ABC superfamily protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 4862
95 % 7 12 5754 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 7 12 5738
70 % 7 12 5715
50 % 7 12 5497
40 % 7 12 5363
30 % 7 12 5079
Entity #4 | Chains: A,B
Fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 1245
95 % 11 17 1409 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.7
PDBFlex
90 % 11 17 1446
70 % 11 17 1481
50 % 12 22 1075
40 % 23 33 816
30 % 23 33 851

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures