Sequence Similarity Clusters for the Entities in PDB 3PUX

Entity #1 | Chains: E
Maltose-binding periplasmic protein protein, length: 378 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 66 456
95 % 86 127 238 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.3
PDBFlex
90 % 99 159 154
70 % 160 242 92
50 % 160 242 114
40 % 160 242 133
30 % 173 256 132
Entity #2 | Chains: F
Maltose transport system permease protein malF protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 5481
95 % 4 12 6326 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.2
PDBFlex
90 % 4 12 6342
70 % 4 12 6263
50 % 4 12 5884
40 % 4 12 5813
30 % 4 12 5469
Entity #3 | Chains: G
Maltose transport system permease protein malG protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 5194
95 % 4 12 6221 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 4 12 6128
70 % 4 12 6166
50 % 4 12 5892
40 % 4 12 5734
30 % 4 12 5474
Entity #4 | Chains: A,B
Maltose/maltodextrin import ATP-binding protein MalK protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 1303
95 % 4 17 1487 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.7
PDBFlex
90 % 4 17 1516
70 % 4 17 1547
50 % 4 22 1142
40 % 14 33 851
30 % 14 33 897

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures