Sequence Similarity Clusters for the Entities in PDB 3PRX

Entity #1 | Chains: A,C
Complement C5 protein, length: 1676 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13511
95 % 5 10 5006 Flexibility: High
Max RMSD: 27.7, Avg RMSD: 10.0
PDBFlex
90 % 5 10 5120
70 % 5 10 4982
50 % 5 10 4879
40 % 5 10 4756
30 % 5 10 4584
Entity #2 | Chains: B,D
Cobra venom factor protein, length: 1642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17952
95 % 1 3 16808 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 16527
70 % 1 3 15471
50 % 2 4 10562
40 % 2 4 9952
30 % 2 4 9186
Entity #3 | Chains: X,Y
Superantigen-like protein 7 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27638
95 % 2 2 23843 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 12074
70 % 6 6 8366
50 % 6 6 7817
40 % 20 20 1804
30 % 23 23 1455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures