Sequence Similarity Clusters for the Entities in PDB 3PCK

Entity #1 | Chains: A,B,C,D,E,F
PROTOCATECHUATE 3,4-DIOXYGENASE protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 36 180
95 % 22 36 239 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 22 36 250
70 % 22 36 282
50 % 34 52 288
40 % 34 52 299
30 % 34 52 312
Entity #2 | Chains: M,N,O,P,Q,R
PROTOCATECHUATE 3,4-DIOXYGENASE protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 357
95 % 26 40 240 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 26 40 251
70 % 26 40 283
50 % 38 56 286
40 % 38 56 297
30 % 38 56 310

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures