Sequence Similarity Clusters for the Entities in PDB 3PCF

Entity #1 | Chains: A,B,C,D,E,F
PROTOCATECHUATE 3,4-DIOXYGENASE protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 36 196
95 % 28 36 255 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 28 36 267
70 % 28 36 307
50 % 40 52 333
40 % 40 52 345
30 % 40 52 358
Entity #2 | Chains: M,N,O,P,Q,R
PROTOCATECHUATE 3,4-DIOXYGENASE protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 403
95 % 32 40 254 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 32 40 266
70 % 32 40 308
50 % 44 56 335
40 % 44 56 346
30 % 44 56 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures