Sequence Similarity Clusters for the Entities in PDB 3PAB

Entity #1 | Chains: A,D
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 49 539
95 % 31 66 507 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 31 66 532
70 % 432 822 6
50 % 433 827 8
40 % 458 871 9
30 % 459 895 12
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 144 111
95 % 85 273 67 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 85 273 74
70 % 524 1076 4
50 % 534 1100 4
40 % 534 1100 4
30 % 534 1100 7
Entity #3 | Chains: C,F
Ovalbumin epitope, EIINFEKL protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures