Sequence Similarity Clusters for the Entities in PDB 3OPU

Entity #1 | Chains: A,B,C,D,E,F
SpaP protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13248
95 % 1 1 13072 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 1 13792
70 % 1 1 12299
50 % 4 4 8141
40 % 4 4 7881
30 % 6 8 5169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WOY 1 A AGGLUTININ RECEPTOR C-TERMINAL DOMAIN, RESIDUES 1083-1413 1302
2 2WQS 1 A AGGLUTININ RECEPTOR ISOPEPTIDE BOND BETWEEN LYS 1259 AND ASN 1393 C-TERMINAL DOMAIN, RESIDUES 1083-1413 1302
3 4OFQ 1 A, B Putative cell surface protein C23 domain residues 971-1307 1314
4 5DZ9 1 A BspA UNP residues 554-881 1311
5 2WZA 1 A AGGLUTININ RECEPTOR C-TERMINAL DOMAIN, RESIDUES 1061-1413 1302
6 3OPU 1 A, B, C, D, E, F SpaP C-terminal domain 1309
7 5DZA 1 A BspA C terminal domain, UNP residues 554-881 1311
8 4Z23 1 A Cell wall surface anchor protein UNP residues 554-881 1311