Sequence Similarity Clusters for the Entities in PDB 3ODQ

Entity #1 | Chains: A,C
Hemoglobin subunit alpha protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 205 219 43
95 % 241 256 40 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 242 257 44
70 % 320 340 22
50 % 694 735 7
40 % 694 735 7
30 % 742 783 10
Entity #2 | Chains: B,D
Hemoglobin subunit beta protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 154 166 78
95 % 243 257 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 247 261 37
70 % 333 353 17
50 % 695 735 7
40 % 695 735 7
30 % 743 783 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures