Sequence Similarity Clusters for the Entities in PDB 3OAA

Entity #1 | Chains: A,B,C,I,J,K,Q,R,S,Y,Z,a
ATP synthase subunit alpha protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5956
95 % 1 4 3478 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 4 3536
70 % 1 4 3527
50 % 32 73 189
40 % 32 73 200
30 % 36 81 192
Entity #2 | Chains: D,E,F,L,M,N,T,U,V,b,c,d
ATP synthase subunit beta protein, length: 459 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 6068
95 % 1 4 3427 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.2
PDBFlex
90 % 1 4 3537
70 % 2 5 3301
50 % 7 21 943
40 % 7 21 984
30 % 7 21 1025
Entity #3 | Chains: G,O,W,e
ATP synthase gamma chain protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24353
95 % 1 4 12462 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 4 12244
70 % 1 4 11721
50 % 1 4 10702
40 % 4 13 3853
30 % 33 72 694
Entity #4 | Chains: H,P,X,f
ATP synthase epsilon chain protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6535
95 % 3 9 6537 Flexibility: High
Max RMSD: 19.9, Avg RMSD: 10.7
PDBFlex
90 % 3 9 6925
70 % 3 9 6792
50 % 3 9 6118
40 % 3 9 6288
30 % 8 23 2444

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures