Sequence Similarity Clusters for the Entities in PDB 3NDY

Entity #1 | Chains: A,B,C,D
Endoglucanase D protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11693
95 % 2 2 11655 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 11534
70 % 2 2 11016
50 % 3 5 4050
40 % 3 5 3987
30 % 11 17 1717
Entity #2 | Chains: E,F,G,H
Endoglucanase D protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9304
95 % 2 2 10408 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 11535
70 % 2 2 11017
50 % 2 2 10084
40 % 2 2 9514
30 % 2 9 7441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures