Sequence Similarity Clusters for the Entities in PDB 3NBN

Entity #1 | Chains: A,D
Recombining binding protein suppressor of hairless protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13777
95 % 8 9 6222 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 8 9 6248
70 % 9 10 5379
50 % 13 14 4031
40 % 13 14 3968
30 % 13 14 3897
Entity #2 | Chains: B,E
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17087
95 % 5 5 10020 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 5 9928
70 % 6 6 7556
50 % 6 6 7011
40 % 6 6 6784
30 % 6 6 6371
Entity #3 | Chains: C,F
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21095
95 % 3 3 22813 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 3 22152
70 % 3 3 20306
50 % 3 3 16194
40 % 3 3 15025
30 % 3 3 13616
Entity #4 | Chains: X
DNA, HES1 promoter dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA, HES1 promoter dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures