Sequence Similarity Clusters for the Entities in PDB 3N1F

Entity #1 | Chains: A,B
Indian hedgehog protein protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12993
95 % 4 8 7631 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 8 7609
70 % 4 24 1971
50 % 4 24 2013
40 % 4 24 2062
30 % 4 24 2088
Entity #2 | Chains: C,D
Cell adhesion molecule-related/down-regulated by oncogenes protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12329
95 % 1 3 12000 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 3 12058
70 % 1 7 6313
50 % 1 7 6186
40 % 1 7 6016
30 % 1 7 5706

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures