Sequence Similarity Clusters for the Entities in PDB 3MRJ

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 36 1412
95 % 81 285 63 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 91 347 38
70 % 234 832 6
50 % 235 846 7
40 % 241 892 8
30 % 241 917 13
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 223 727 2
95 % 247 776 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 251 794 4
70 % 282 1098 4
50 % 287 1122 3
40 % 287 1122 3
30 % 287 1122 9
Entity #3 | Chains: P
9-meric peptide from Serine protease/NTPase/helicase NS3 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures